Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015950372.1_cds_XP_016490854.1_81234
CDS Infomation

[gene=LOC107810576] [db_xref=GeneID:107810576] [protein=tripartite motif-containing protein 40-like isoform X3] [protein_id=XP_016490854.1] [location=complement(join(9229..9272,9369..9831,9913..10015,10992..11074,11197..11298,12181..12448,13544..13665))] [gbkey=CDS]
Sequence

ATGATAGGAGGGAATAATAGTTTTGGGAAGACAATTTGCTCAATCTGTTATGAAGATCTA
AATCCTATTATTGAAGACCTCCAATCCATTTCTATTTGCGGTCACGTTTTTCACGAGATT
TGTCTTCAGCAATGGTTTGAATACTGTACAAATGGAAAAAAGAAGAATTGTCCAGTTTGC
AAACAGGCTTGTTCAGAACAAAATGCAAATAGGCTTTATTTCCAATCAGTTGGTGATCCA
AATGATACAAGTCTGACCAAGAAACCCCGTGATCATGAAGAGGATCCACGTGAACTGAGA
AATGAGGTCAAAAGATTGGAGGGGAAAGTTTTACAGTTGACTTCTACTTTGGAGAAACAG
CTGAAAGATCTCAAAGAAGTCAATGCAGAGCTTTTCACATGCAAGGAAGAGTTGAAAATA
GAAGCGACTCTAAAGAATGAAGCTGTGAAACAGGAGGCAGCCATTCAGCAGTTGTTACAT
CTTAAATCCAAGGAGCTAGATCGATCAACTTTGGAGTGCATAAGGCTAAAAGATGGAAAT
ATGGCTCTAGATAGGGAGCTTGCAGCACTCAAGTTGAGTTACAAAGAACTAGTGACCAAG
TGCGATACTCATGGAAGGCGAGAGGCTCGTTCTCTTAGGAAACTTGAGAAGTCAAAAGAA
AAGATAAATAAGTTGAAGACCAGGGTCCAAGAACTTGAGACGGCACTTGAAAGAAAAGAA
AAAGATAATGAAAATTTGAGAACTTTGAGAGCTGCCAAGAAAAACTTTGAGTTGTATCAA
GGAAGCAAAGAACCCAAAGTTGACCGACGTTCATATGAGAATCAGAATAAGGCACCTGCT
GCGACAGAAGTAGATTTATGCATAGTCACTGGCTCATGCAATGATTTATCTAGACCAAGG
AGAAAAAGAAAGTCTAAGTCTAAGGAAAAGAGTATACAAAACACGGCAGAAGATATTATA
ACTGGTGGAAGTCAAGTGCAGGGATCAGAAAATAAGGATGGAATCTCAGGTTCAAGGAAT
TCCCCTGTTATTATTCTTGACGATGATACTGATCTTCCGCTTCTAGATGATGTTACACAG
CATCAGCCCTCGTTTCGCATCAGGAAAGAGACTTCTGCACCAGTTATACTTGCCCATCCA
GTTTTAACTTATTGCTCTGCTTTTACCCTCTTGGCGGAGATTTAA

Peptide Sequence

PEP ID

XP_016490854.1
PEP Infomation

PREDICTED: tripartite motif-containing protein 40-like isoform X3 [Nicotiana tabacum]
Sequence

MIGGNNSFGKTICSICYEDLNPIIEDLQSISICGHVFHEICLQQWFEYCTNGKKKNCPVC
KQACSEQNANRLYFQSVGDPNDTSLTKKPRDHEEDPRELRNEVKRLEGKVLQLTSTLEKQ
LKDLKEVNAELFTCKEELKIEATLKNEAVKQEAAIQQLLHLKSKELDRSTLECIRLKDGN
MALDRELAALKLSYKELVTKCDTHGRREARSLRKLEKSKEKINKLKTRVQELETALERKE
KDNENLRTLRAAKKNFELYQGSKEPKVDRRSYENQNKAPAATEVDLCIVTGSCNDLSRPR
RKRKSKSKEKSIQNTAEDIITGGSQVQGSENKDGISGSRNSPVIILDDDTDLPLLDDVTQ
HQPSFRIRKETSAPVILAHPVLTYCSAFTLLAEI

Transcript Sequence

Gene sequence data has not been registered.